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Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.)
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Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
A nuanced understanding of peat moss drives insight into … Boggy peatlands, which hold much of the Earth’s carbon as well as material that can be converted to energy, are … by minimizing flood risks and filtering water. Peat formed there over thousands of years sequesters more carbon …
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Nikos Kyrpides
… lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters …
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Oleaginous Yeast Biology Elucidated With Comparative Transcriptomics
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A Plant Root Atlas for Tracking Developmental Trajectories
… collaboratively developed for this purpose by the JGI plant comparative genomics data portal  Phytozome and will be available for … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean
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A One-Stop Shop for Analyzing Algal Genomes
… greater bioeconomy. By bringing together publicly available genomic data on algae into one place, PhycoCosm allows users … system for microbial and metagenome datasets, MycoCosm for comparative analysis of fungal genomes, and Phytozome for comparing …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… sojae, which imperils soybean harvests. The subsequent comparative analysis of these two pathogens, led by the JGI and Virginia … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Enlarging Windows into Understanding Gene Functions
… in the genome by adding tagged transcription factors to a genomic DNA library. “It’s an innovative way to rapidly … through multiDAP, which allows researchers to conduct comparative analyses across the genomes of multiple species … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Streamlining the Design-to-Build Transition with Build-Optimization Software Tools
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