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Improving the Cacao Genome and Phytozome
… (ICCO), global cocoa bean production in 2017-2018  was 4.6 million metric tons . The global chocolate brands … fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s … used for systemic orthology to enable use for both cacao functional biology and breeding.     …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, that maybe … in the field, you can probably skip straight on to Episodes 4 5 and 6, for some fun interviews, unless you want to fact …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to … on JGI Advisory Committees are outlined in this Code of Conduct. … users and their science including technical capabilities offered, proposal review procedures and the annual meeting. …
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JGI on the 2021 Highly Cited Researchers List
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … past year, through programs including the JGI-UC Merced Genomics Internship Program and the DOE Office of Science … understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity toward …
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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a dizzying array of combinations, are unremarkable, save perhaps for the … there is no shortage of fungal genomes anymore, but their functional interpretation is as tough as it has been 10 …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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Virus-Microbe Interactions of Mud Island Mangroves
… a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of his research was conducted at the JGI through the DOE … the methane cycling within these mangrove wetlands.” A chapter of Rambo’s research focuses on how viruses influence …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER … is discoverable and accessible. Linking the resources of powerful institutions like the JGI, KBase, NCBI, NMDC, … access to diverse datasets that deepen our understanding of how organisms interact with each other and with their …
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach to … mission to unveil the mysteries concealed within the “dark” functional realm. Their focus sharpened on deciphering the … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Natural Prodcast Episode 15: Katherine Duncan
… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … to sort of compare, conceptually, that data with genomics and the kind of things that I do with genome … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … the level of photosynthesis in a model green alga called Chlamydomonas reinhardtii. We’re using an attentive deep … huge amounts of data. I was excited to work on fungal genomics and the fact that I got to do a project involving …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a Research … to experimental manipulation in the laboratory because of its compact genome, diploid nature, self compatibility, … Science, Cornell University, NY; PhD in Biology, University of Illinois at Chicago, IL Postdoctoral training, Carnegie …
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