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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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Combining Hadoop with MPI to Solve Metagenomics Problems that are both Data- and Compute-intensive
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Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data
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Making a Lichen Together
The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … autonomy; they can be isolated and grown separately from each other. A possible explanation, according to the …
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CSP New Investigator Call
The CSP New Investigator Call is for investigators and research initiatives new to the JGI. … FICUS proposal.   Competitive projects will provide pilot data to assess feasibility of a novel approach or form the …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was … recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities … calls. These documents have been shared with permission from the PIs who drafted them.  … Elucidating Sphagnum …
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … effective management and strategic objectives for the JGI’s data science, informatics and information technology (IT) …
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Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
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Metagenomic reconstructions of bacterial CRISPR loci constrain population histories
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Metagenomes and Metagenome-Assembled Genomes from Microbiomes Metabolizing Thin Stillage from an Ethanol Biorefinery
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Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
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