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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
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Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation
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The Genome of Akkermansia muciniphila, a Dedicated Intestinal Mucin Degrader, and Its Use in Exploring Intestinal Metagenomes
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Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
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A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics
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Special Initiatives & Programs
… ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If “BERSS” is … for user proposals . … The JGI is inviting researchers using the U.S. Culture Collection Network (USCCN) to …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … allow researchers to focus on specific microbes within metagenome samples and associate their sequences with their … to just over 50 percent of the targeted metagenome sequence reads. This demonstrates the viability of HCR-FISH+FACS for …
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A Community Resource for Secondary Metabolite Researchers
… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … for users to publicly engage with each other, share annotations and collaborate on solutions.  Compared with …
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User Executive Committee Charter
… users and their science including technical capabilities offered, proposal review procedures, and the annual user … recommendations to the JGI regarding technical capabilities offered, including areas where more or less capacity is … annual JGI User Meeting, as well as input on other aspects of the meeting such as duration, location, and cost; …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … plays a central role in advancing functional genomics, focusing on developing genetic systems that can address global … serves as a community resource for comparative analysis and annotation of all publicly available genomes from three …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a … responsible for the mid-19th century Irish potato famine.   Shortly before the emergence of the SOD environmental … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Metagenomics
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