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Viral niche-partitioning: Comparative genomics of giant viruses across environmental gradients in a High Arctic freshwater-saltwater lake
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Viral dynamics in a high-rate algal pond reveals a burst of Phycodnaviridae diversity correlated with episodic algal mortality
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Tunturi virus isolates and metagenome-assembled viral genomes provide insights into the virome of Acidobacteriota in Arctic tundra soils
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … in as-yet unveiled microbes. Harnessing the collective power of more than 26,000 microbiome datasets, all … per se.”  Recently, other research teams have leveraged the power of artificial intelligence to decode the language of …
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Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4
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Promoter elements associated with RNA Pol II stalling in the Drosophila embryo
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Tuning of Gene Expression in Clostridium phytofermentans Using Synthetic Promoters and CRISPRi
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Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation
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Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities
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Accelerating Metagenomics Discoveries with Deep Learning
… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … into multiple interconnected layers. The architecture of these algorithms, inspired by communication networks … found in nature, allows machines to “learn” features. State of the art algorithms can perform astonishing degrees of …
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Mining Metagenomes for Cas Proteins
… Institute.  The Science Researchers report the discovery of miniature Clustered Regularly Interspaced Short … Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … any given time, many species in a community may be in ‘low power mode’, where they do very little.  SIP experiments can … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like …
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