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Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae
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IMG/M: a data management and analysis system for metagenomes
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AmiGO: online access to ontology and annotation data
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Toward a Data Infrastructure for the Plant Cell Atlas.
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Visualizing metagenomic and metatranscriptomic data: A comprehensive review
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A roadmap for equitable reuse of public microbiome data
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome … Input & sequencing Q(uestion): How much DNA is needed for “regular” vs the ultra-low input library creation … sequenced without pooling, which yields ~ 180 Gb of data per library. Q: How much DNA/coverage is required for …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted … — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … a  Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required …
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Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Australia but is increasingly farmed in other countries for essential oil production. The recent assembly of two … revealed the largest number of TPS genes of any currently sequenced plant, a number closely followed by E. globulus . … from a biofuels production perspective. By using genomic database alignment tools, researchers searched for TPS genes …
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Pinning Down a Piece of Photosynthesis
… and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into … of that machine — photosynthesizers’ DNA and RNA. These sequences provide a list of machine parts, and an idea of … or DRI for short.  A kaleidoscope of structure-function data To study DRI experimentally, Blaby-Haas, Grosjean and …
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A More Intuitive Phytozome Interface
… the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome … of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, … preset for the gene in question, so you can download sequences, annotations, and gene structures. These genomes’ …
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