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Sequencing Submission Requirements for DNA Synthesis
… Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an open source desktop application written by M. Wayne Davis or commercial options include …
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Predicting the chemical space of fungal polyketides by phylogeny-based bioinformatics analysis of polyketide synthase-nonribosomal peptide synthetase and its modification enzymes
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and … courses across the globe for insights into reproductive, space and genome biology . The undeniable power of plants, … The work conducted by the US Department of Energy Joint Genome Institute is supported by the Office of Science of …
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The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there. This is Dan again, and … we need people from outside of the JGI to come to us with projects that will help us actually drive this strategic …
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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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The YNP Metagenome Project: Environmental Parameters Responsible for Microbial Distribution in the Yellowstone Geothermal Ecosystem
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Virus-Microbe Interactions of Mud Island Mangroves
… University of Texas at Austin, will defend his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science … wetlands in south Texas,” he explained. “In terms of my project, I wanted to incorporate that CSP, but also look at …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  … website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … possible given the finite staff available to the Phytozome project. What will happen to Phytozome v12 URLs after August …
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The Biota Project: A Case Study of a Multimedia, Grassroots Approach to Scientific Communication for Engaging Diverse Audiences.
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User Support Analysis Group
… The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work …
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