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JGI Portals
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The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle
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Jeremy Schmutz
… from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed the JGI Plant … IL … Healey, A.L., Garsmeur, O., Lovell, J.T. et al.  2024.The complex polyploid genome architecture of sugarcane. Nature 628, 804–810. Sreedasyam, A., Plott, C., MdS Hossain, J. T., …
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Taking Stock of the Known and Unknown Microbial Space
… could help map out microbial diversity hotspots Over the past few decades, advancements in sequencing technologies … publicly available genome sequence data generated over the past three decades, their study assesses what fraction of … quality scores representing potential genomes, and nearly 44,000 metagenomes. All of the data are publicly available …
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JGI@25: Stories from Intern Alumni
… help solve energy and environmental challenges. Over the past 25 years, the JGI has hosted interns from a number of …
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Identification of a gene encoding the last step of the L-rhamnose catabolic pathway in Aspergillus niger revealed the inducer of the pathway regulator
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Development of PCR-based markers for the identification and detection of Lophodermella needle cast pathogens on Pinus contorta var. latifolia and P. flexilis
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Characterization of digestate microbial community structure following thermophilic anaerobic digestion with varying levels of green and food wastes
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Dan Rokhsar
… leads the JGI’s Computational Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and …
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A Community Resource for Secondary Metabolite Researchers
User Facility located at Berkeley Laboratory, built off past experience in developing a secondary metabolites portal … annotations and collaborate on solutions.  Compared with past efforts at the JGI, like IMG-ABC, and other academic … of Energy Joint Genome Institute (https:// ror.org/04xm1d337), a DOE Office of Science User Facility, is …
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New Research Sheds Light on Diversity in the Deep Sea
… and the University of Wisconsin-Madison collected 40 samples from five oceanic regions to better understand … US-National Science Foundation grants OCE-0728391, OCE-0937404, OCE-1558795 to A-L.R, and OCE-2049478 and DBI-2047598 to …
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QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived from Manihot glaziovii
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