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DAP-seq Drives Robust Mapping of Gene Regulation
… falling. As  published online in  Nature Plants  on July 15, researchers have developed multiplexed assays — … bioenergy and bioengineering applications. “We worked with 10 species ranging from grasses to broccoli and trees like poplar, spanning about 150 million years of evolution,” said Leo Baumgart, first …
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Workforce Development & Education Outreach
… internship partnership that started in the summer of 2014. …
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Silver age of GOLD introduces new features
… environmental samples with canonical names.  Since its 1997 launch, active GOLD users have spurred its growth and … of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported … of the U.S. Department of Energy operated [DE-AC02-05CH11231]; National Energy Research Scientific Computing …
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A Collaboration to Improve Plant Genome Annotations Across Species
… Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research groups. The team set out to characterize the … each contributing their expertise to different aspects of the project. Sarah:  You all hit a big milestone …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… for the next five years. It also includes more than 130 implementation milestones to help track and drive … path, has previously proven successful; in the 2018-2023 five-year strategic plan, the JGI accomplished 90% …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… the virus had been infecting the cell. The team assembled 130 genomes from their sample — a small proportion of the … mat, the virus-to-host ratio for most pairs was close to 1. Even the most abundant virus was only 11 times more abundant than its host. There just don’t seem …
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Old can be new again: HAPPY whole genome sequencing, mapping and assembly
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User Executive Committee Charter
… for the annual JGI User Meeting, as well as input on other aspects of the meeting such as duration, location, and cost; …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from … Malmstrom, Nandita Nath & W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan …
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JGI Hosts GPU Hackathon in May
… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing … organizing nearly a dozen hackathons around the world in 2019, only the JGI hackathon is particularly focused on … maximum of six teams will be hosted at the Hackathon, with 1-2 mentors per team. Participants will be expected to have …
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Soybean (Glycine max) Haplotype Map (GmHapMap): a universal resource for soybean translational and functional genomics
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JGI@25: Studying Sorghum’s Survival Skills
… full sunlight and hot temperatures, sorghum plants can photosynthesize and thrive — some varieties grow their leafy … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … sequenced, this line is sweeter, taller, and grows more biomass. In ongoing work, JGI and collaborators are continuing …
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