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Digging into Microbial Ecosystems Deep Underground
… National Laboratory. Letters of Intent are due March 16, 2022 to freely access resources at multiple DOE user …
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Beyond the tip of the iceberg; a new view of the diversity of sulfite- and sulfate-reducing microorganisms
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JGI at the AGU Fall Meeting
… User Facilities in One Proposal via FICUS December 13 8:12 am Convention Center eLightning Theater IV: Kuno Kasak, … 4pm CST Convention Center, Poster Hall D-F poster B25J-1604: Eoin Brodie, Berkeley Lab: “Uncovering microbial … Hall D-F poster B45O-1813  : Maggie Bowman, PNNL: “EMSL’s 1000 Soils Project: core collection strategy and data types …
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Improving the Cacao Genome and Phytozome
… That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest buyers of cocoa, is … and ensure there will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
… Completed VFP applications are due on January 12, 2022. Faculty interested in developing proposals with …
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Data Ecosystem
… The collaborations present exciting possibilities for scientific exploration, granting access to diverse datasets that … platforms are future-ready for advancements enabled by artificial intelligence and other tools. By bringing users … National Energy Research Scientific Computing Center …
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Katherine Louie
… analysis, creation of large metabolite databases by running 1000s of metabolite standards, and development of … untargeted analysis pipelines.  Beyond profiling over 10k samples/year, Dr. Louie and her team work with other JGI … to assess metabolite turnover, DNA-SIP for helping identify active micro-organisms within complex communities, and …
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How to Submit Sequencing Samples
… demonstrate the importance of proper nucleic acid quantification in our Illumina and PacBio sequencing workflows … Protocol JGI’s Small RNA Sample QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for … the United States must also include a completed Export Certification Form . 2) Obtain Approval for Shipping Before …
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Work With the JGI! Tips for a Winning CSP Proposal
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Rex Malmstrom
… Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth … of the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized … for stable isotope probing metagenomics. mSystems 8:e01280-22. Volland et al. 2022.   A centimeter-long bacterium …
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Streamlining Regulon Identification in Bacteria
… demonstrated the efficacy and potential of regulon identification by in vitro transcription-sequencing (RIViT-seq) … efficacy of RIViT-seq, researchers recently characterized 12 sigma factors and were able to identify the associated … addressed in the study were found to control more than 100 genes, one of which was directly characterized by …
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JGI Interns at UC Merced Earn CAMP Merit Awards
… technology, engineering and math (STEM) fields. At the 2016 CAMP Statewide Undergraduate Research Symposium , held … the 99 students who attended, representing 9 UC campuses, 10 special merit posters/presenters and 10 honorable … Math; Faculty Mentor: Dr. Arnold Kim)   “It is a beautiful thing, that our young campus earned 25% of the …
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