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… website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … v12 was first deployed (as the foundation for Phytozome v10) back in 2014.  Several components of that codebase are … grab genomes based on which version of Phytozome (e.g., 9, 10, 11, 12) they were first released in.  Are any genomes …

… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These students analyze the genomes, write reports, and publish first-author papers, …

… The mission of the Joint Genome Institute is to serve the scientific community as a … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and …

… analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and …

… Panicum hallii genomes offer insights to drought tolerance. The Science … hallii (Hall’s panicgrass), by generating two complete genomes from varieties that diverged over a million years … var. filipes (94.8% complete) and resequenced a host of natural collections from across the species range. With …

… stories, told through print narratives, videos, a podcast episode, and presentations below. … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Pan-genome Graphs: Approaches for Complete Categorization of …

… After studying the mechanism of action of antifungal natural products and their derivatives during her Ph.D. in … Woyke pursued her postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her research … at the University of California, Merced's School of Natural Sciences since 2015. Prospective users with specific …

… So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the story behind that giant assembly from Lake Mendota. In this episode: the software evolution that made metagenome …