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101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Thus, having reference  Chaetoceros genomes would provide more information on these ecologically relevant species. … reviewers allowed me to be better prepared and to avoid making the same mistakes,” he said. “Although in my specific case the projects are different for the two proposals, I can …
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Pinning Down a Piece of Photosynthesis
… The products of photosynthesis are easy to point out. Plants, algae and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into … was the spark that started it all,” Blaby-Haas said. A more apt name for a Jane Doe After screening hundreds of …
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DOE JGI Interns Share Their Summer Experiences
… analyses at their desks. As part of the DOE JGI’s efforts to promote diversity and inclusion in the sciences, … worked with Zhong Wang while Karen Tolentino worked with Brachypodium researcher John Vogel. Other students hosted … summer were: Rida Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with …
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Partners
… has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the services of the … access to datasets, workflows, and tools to seamlessly expand data functionality. Close partnerships with other user …
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The Mobilome in the Mire
…   For years, researchers have known that many datasets miss a key part of microbial genomes: the mobile genetic elements, or MGEs, that can move … engineering these microbes in the future. Join Sarah Bagby (Case Western Reserve University) and Simon Roux (JGI) as …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked … newest 5-Year Strategic Plan: Beyond Basepairs — A Vision for Integrative and Collaborative Genome Science , the … directions,” said Mouncey. “In this way, we can be more responsive to cross-cutting opportunities, align goals …
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Analysis of Brachypodium genomes with genome-wide optical maps
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Programs & Platform Leads
… of complex biological, earth, and environmental systems for energy and infrastructure security. In complement to … drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, … infrastructure of Genomic Technologies and Data Science & Informatics. The JGI also sustains a vibrant community …
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Building Wet and Dry Lab Skills
… students coming to the DOE Joint Genome Institute for research and training experience funded by a DOE … Mikes worked with mentors Yi Zhai and John Vogel from the Plant Functional Genomics Group to study the effects of  … microbiome data via programming languages like Python. The more specific goal of the project is to determine how …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant roots. Plants provide photosynthesized carbon, while … studies to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to …
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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