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Jane Grimwood Named HudsonAlpha Genomics Chair
… City. Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library … after the JGI was established to work on the Human Genome Project in 1997. She was a group lead at Stanford Human … that Grimwood contributed to include: A 2021 Nature paper announcing a high-quality reference sequence of the …
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JGI@25: Studying Sorghum’s Survival Skills
… climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in common … strengths into other plants. A brief timeline of sorghum projects at the JGI: 2009: JGI and collaborators use … improve the genome’s accuracy, and increase its length by 29.5 Megabasepairs. 2017: Pan-genome analysis of sorghum …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Breaking the reproducibility barrier with standardized protocols for plant–microbiome research
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Sequencing Submission Requirements for DNA Synthesis
… be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … files. ApE is an open source desktop application written by M. Wayne Davis or commercial options include SnapGene . …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … DAN UDWARY: Nothing to be sorry about. Yeah, no, your project was really cool. The vanadium haloperoxidases are … and you spearheaded the genome mining class. And we got a paper out of that , and you taught everybody how to look at …
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An Integrated Dataset to Understand Ecosystem Interaction
… to large ecosystem-level processes for the first time. By collecting data from 27 different poplar ( Populus … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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Webinar: PhycoCosm Tutorial
… data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. … agree, we also have a way to do manual annotation – not covered in these tutorials 6.  Q: On the genome synteny … the resources for free. 8.  Q: What makes a successful project? A: Combination of: DOE mission relevance Science …
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The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data
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COVID-19 pandemic reveals the peril of ignoring metadata standards
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EcoFABs: advancing microbiome science through standardized fabricated ecosystems
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Community standards and future opportunities for synthetic communities in plant–microbiota research
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