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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… communities. He’s focusing on the Arkansas River and how microbes might be influencing its health.  He sat down … suggests, there is metal in the hills, and it has legacy mining that goes back more than 100 years. And in … See you next time. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world
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Micro-Scale Applications Group
… the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also … technology in order to enhance the quality of single-cell genomes and directly link functional information with … sequence analysis to recover the genomes of uncultivated microbes. We also apply labeling strategies that allow us to …
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JGI@25: Strengthening Soybean
… and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … soybean genome sequence and ASR in this JGIota, a Genome Insider podcast minisode.)  In 2016, the JGI accepted a proposal from …
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Old can be new again: HAPPY whole genome sequencing, mapping and assembly
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread their DNA, they can affect how microbes cycle nutrients and adapt to climate change. …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… can help maximize peatlands’ potential as carbon sinks and minimize their role as carbon sources. Summary Sphagnum, a … change. Researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … protecting these ecosystems. … The work (proposal no. 10.46936/10.25585/60001030) (A.J.S.) conducted by the US …
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Corals in Hot Water Get Help From Their Microbes
As waters warm due to climate change, corals are in mortal peril. But corals comprise multiple organisms: a … When warm waters stress corals, it might be their microbes, including their photosynthetic partner, that help them take …
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Benjamin Cole
Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants … (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … List of pubs available on NCBI … Implementation of the …
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific community as … with JGI’s data release policy.  Interactions with applicants and others who might be interested in the project are …
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal … Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … applied mini-metagenomics to these samples by sorting the microbes into small pools of cells that were then sequenced …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … physiologically and enzymatically, with descriptions of how their activities influence biochemical reactions. For this article alone, more than 600 genomes (dubbed “GEBA-Actino”) were sequenced from DSMZ …
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