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Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … However, no microbe works alone. Archaea, bacteria, and viruses all operate in concert to form the foundation of … Frontiers Group, the National Science Foundation (MCB-1244557 to J.A.D.) and the Lawrence Berkeley National …
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years … they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy …
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Examples: Successful LOIs & Submissions
… … Metabolic processes and trophic interactions in Antarctic cryptoendolithic communities … CSP Large-Scale LOI #1 … CSP Large-Scale LOI #2 … CSP New Investigator Submission … CSP Functional … Genomics Submission … FICUS Example #1 … FICUS Example #2 …
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IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses
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Genomics discovery of giant fungal viruses from subsurface oceanic crustal fluids
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds
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Natural Prodcast Episode 19: Bill Fenical
… seems hard to believe in retrospect. BILL FENICAL: Well, in 2021, absolutely hard to believe. But when you go way back, … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And … eight of these weird bacteria. And we proposed to the Joint Genome Institute. DAN UDWARY: Oh, that’s where we come in. …
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JGI@25: Roots of a Mutualist Relationship
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was … a symbiotic relationship with the poplar, a JGI Flagship Genome and the first tree to have its genome sequenced. …
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Krishna Palaniappan
… for the design and maintenance of the Integrated Microbial Genomes (IMG) data warehouse, and integration of genomic and …
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