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The parallelism motifs of genomic data analysis
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… energy and environmental challenges.   Scanning the California oak woodlands from the air, large swaths of the … north into Oregon and beyond. The disease is known more commonly as Sudden Oak Death or by its acronym, SOD. Of … large-scale “citizen science” project to generate real-time data for modeling and predicting the spread of a plant …
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JGI at the AGU Fall Meeting
… hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest … Lab (short talk): “How do we make interdisciplinary sample data more FAIR?” December 16 7:55am, Convention Center Rm …
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Fungal Friends or Foes in Plant Roots
… health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. … and fungi can form such symbiotic partnerships. To learn more about these other plant-fungal relationships, an … isolates from the collection. The team then compared this dataset against nearly 80 previously published fungal …
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between … is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were provided by the U.S. …
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IMG/M: a data management and analysis system for metagenomes
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
Congratulations to Susannah Tringe , one of eight scientists and … highest honors! Tringe, a microbiologist, was recognized for “advances in sequence-based studies of microbial … group. The award ceremony was held January 19, 2021. Learn more here in the Berkeley Lab story.   …
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JGI & KBase at PAG XXVII
… place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  … collaborative science opportunities. Learn how to apply for a project with the JGI Community Science Program, and … Integrative Genomics Building (IGB). Click here to learn more about this move. …
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Graduate Students Get Thesis Research Opportunity at the JGI
… to answer our most pressing problems. I’m very much looking forward to working with JGI and LBNL scientists and have … next generation workforce.  Since its inception in 2014, more than 20 UC Merced students have contributed to the … to work with JGI virus researchers and harness the IMG/VR database. “The SCGSR award will further my goal of resolving …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group … The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our …
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A data analysis and coordination center for the human microbiome project
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Integrative analysis of multimodal mass spectrometry data in MZmine 3
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