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Marine Microbe Contains Multitudes
… groups with different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North … of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … mask the striking diversity of their genomic capabilities. According to Boeuf, 16S rRNA genes are like stamps on …
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A Step Toward Controlling Soybean Rust
… as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , Sebastien … for Agricultural Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop better … JGI Flagship plant genome , and JGI  published its genome sequence in 2010.       … The U.S. Department of Energy …
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JGI@25: Using Team Science to Build Communities Around Data
Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes for all fungi families — essentially, the … including genomes that are both large and complex. The first publication of a genome generated by the OGG …
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1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
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The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a … the University of Texas at Austin produced a high-quality reference sequence of the complex switchgrass genome. The … study , researchers focused on two types of naturally occurring switchgrass, those with 4 copies of the genome (4X) …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
Laboratory (Berkeley Lab), has produced a high-quality reference sequence of the complex switchgrass  genome using samples … John Lovell, an evolutionary biologist at HudsonAlpha and first author of the study. “For that, it’s necessary to have …
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JGI Mural
… 3rd floor of the Integrative Genomics Building whimsically references dozens of iconic JGI contributions to advancing … The two-story JGI mural was commissioned for the JGI’s 25th anniversary and done by Berkeley-based artist Nigel Sussman. It was …
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JGI@25: Roots of a Mutualist Relationship
… and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the journal Nature . The … relationship with the poplar, a JGI Flagship Genome and the first tree to have its genome sequenced. Having this first …
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that … Commissioned for the JGI’s 25th anniversary, the JGI mural references dozens of iconic JGI contributions to advancing …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Proposals aim to sequence and annotate genomes from Antarctica to Africa to … Science user facility, 24 large-scale proposals have been accepted from 70 full submissions based on 92 letters of … they also feature in many nutrient cycles. Thus, having reference  Chaetoceros genomes would provide more …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, … around the world. Most of those researchers send their samples in from afar, without ever hearing much about the …
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