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Genomic profiles of four novel cyanobacteria MAGs from Lake Vanda, Antarctica: insights into photosynthesis, cold tolerance, and the circadian clock
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Leo Baumgart
… diverse plant tissues. Dr. Baumgart focuses on expanding functional genomics capabilities through process automation … embryo and root development." Plant Communications 6, no. 10 (2025). Kruse, Colin PS, Sara Calhoun, Bishoy Kamel, … biosensor." U.S. Patent 11,209,412, issued December 28, 2021. Baumgart, Leo, William Mather, and Jeff Hasty. …
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Biochemical characterization of Fsa16295Glu from “Fervidibacter sacchari,” the first hyperthermophilic GH50 with β-1,3-endoglucanase activity and founding member of the subfamily GH50_3
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting … to submit white papers to the Community Science Program’s  Functional Genomics call for proposals .  On July 8, JGI’s … call is open year-round, but proposals submitted by July 30 will be included in the next review. “So webinars like …
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Four Researchers Join JGI User Executive Committee
… time he led the development and initiation of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) project. As a … community and consider new initiatives in areas such as functional studies (e.g., a functional encyclopedia building … Schadt stepped into the UEC chair role effective March 3; Lizzy Wilbanks assumed the vice chair role while Kristen …
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Webinar: MycoCosm Tutorial
… submit metadata and assembly at  https://gold.jgi.doe.gov 10.  Q: Is there any possibility to search for … if you would like to share your data with other researchers 13.  Q: Is it possible to download predicted … 15.  Q: What is the user annotation process (are these functional annotations) and how are these integrated within …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between … some fungal species, other fungi will fill in needed functionalities. This work also shows new overlap between … person at the Walnut Creek Marriott the week of September 30 – October 4, 2024.  …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights into … of photosynthesis are easy to point out. Plants, algae and cyanobacteria create the air we breathe and the fuel for … Blaby, through what is now the  Community Science Program Functional Genomics proposal call, the JGI synthesized …
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JGI@25: The Little Alga That Could
… as a Harvard postdoc. While she had intended to work on cyanobacteria, fate stepped in when a fire at the lab … specific algae. The reference genome is cited in roughly 10% of all since-released publications on green algae. “The … green algal genomes using Chlamy as a reference for functional annotation, including Chromochloris zofingiensis …
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Doubling Down on Known Protein Families
… big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach to … families. From there they focused on families with at least 100 members.  “If you have 100 sequences, the quality of the …
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Katherine Louie
… analysis, creation of large metabolite databases by running 1000s of metabolite standards, and development of … untargeted analysis pipelines.  Beyond profiling over 10k samples/year, Dr. Louie and her team work with other JGI … for integrating metabolomics with genomic data (MAGI) for functional annotation and identifying unknown compounds …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… All told, the disease has accounted for upwards of $30 billion in losses , including the death of tens of … and mechanisms of pathogenesis . Science. 2006 Sep 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. Genetics. Genomes highlight …
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