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Machine learning sheds light on microbial dark proteins
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Shedding light on spatial structure and dynamics in phototrophic biofilms
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FICUS-NERSC/KBASE
… KBase ) integrates systems biology data and tools to help predict biological function.   To jointly support these … Management Office.  At the completion of a project, the JGI makes the assemblies, gene annotations, and analyses …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… Salix purpurea , employ the evolutionary strategy we are far more familiar with: differentiating into male and female … both a gene likely important for sex determination and a shared genetic architecture with Y chromosomes in mammals: a … which would enhance the biosafety of genetically engineered trees. Summary The shrub willow differentiates into …
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Secondary Metabolites Program
… The program aims to tap into the largely unexplored biochemical diversity within secondary metabolites, … Metabolites Program targets the vast and underexplored reservoir of secondary metabolites produced by bacteria, … environments and with each other, from defending against predators to aiding in symbiotic relationships and nutrient …
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How to Target a Microbial Needle within a Community Haystack
… key roles in global biogeochemical cycles remains unexplored and uncultivated. Developing a more targeted genomic … marine bacteria called “Vis6” that are found in North Sea algal blooms. The workflow starts by tagging specific cells using an approach named hybridization chain reaction fluorescence in situ hybridization (HCR-FISH). In contrast …
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Bacillus anthracis genome organization in light of whole transcriptome sequencing
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Thermophilic Dehalococcoidia with unusual traits shed light on an unexpected past
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JGI Early Career Researchers Featured in mSystems Special Issue
… a member of Eloe-Fadrosh’s Environmental Genomics group, makes a pitch for readers to get involved in the developing … uncultivated, Roux outlines what’s been achieved thus far based on computational predictions, and future directions integrating computational …
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Marine Microbe Contains Multitudes
… column, from the warm, well-lit surface, to the blue-lit twilight zone, to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. Scientists have wondered, how can SAR324 exist in so many varied environments? … Now, a recent study published in Microbiome has uncovered that SAR324 encompasses four subgroups, adapted to …
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Industry Engagement Program
… User Facility, the JGI serves more than 2,500 users that predominately come from the public sector: academic and … has a key role to play in providing high-quality, structured and curated data to support AI applications. In an … for genome information with analysis tools for mining and prediction The JGI works in partnership with Berkeley Lab’s …
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An Addiction Crucial to a Fungus’ Reproduction
… both species of organism benefit from association, but was predicted to have evolved from a parasitic interaction with … also regulate its sexual reproduction. The work sheds light on a poorly understood group of oleaginous or … a plant pathogen nor able to reproduce with ease. So far, all endosymbionts discovered in fungi have been shown …
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