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Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus
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The birth of new exons: Mechanisms and evolutionary consequences
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … like Streptomyces , but circular. 10% of the genome encoded natural product pathways. Dan: Yeah, that’s kind of a … was fun having, you know, working with a student who was a geneticist, having them think like a chemist and thinking …
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Uri Neri
… viral genomes and occasionally remembering to document his code. At JGI, he develops tools for viral discovery and … just "spicy messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our …
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Benjamin Cole
… how microbes can colonize plant roots, focusing on genetic components required for effective colonization. In … (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … List of pubs available on NCBI … Implementation of the Index of …
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Codon bias, nucleotide selection, and genome size predict in situ bacterial growth rate and transcription in rewetted soil
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Natural Prodcast Episode 22: Alison Narayan
Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … could have arisen from. DAN UDWARY: OK, so sort of a phylogenetic reconstruction kind of a thing. ALISON NARAYAN: … DAN UDWARY: Sure. ALISON NARAYAN: –and making these blunt changes, you mess things up, which is maybe not surprising. …
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On the origin and evolutionary consequences of gene body DNA methylation
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Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs
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The Phaeodactylum genome reveals the evolutionary history of diatom genomes
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JGI Hosts GPU Hackathon in May
Computing Facility (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … to either jumpstart acceleration or optimize their code on GPUs. While the  OLCF is organizing nearly a dozen … aren’t getting any smaller and we need to keep pace with changes in industry/DOE Advanced Scientific Computing …
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Natural Prodcast Episode 17: Cassandra Quave
Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … without giving any benefit back to the owners of that genetic material? So this is also relevant to bacteria. If … and support training, where we’ve done laboratory exchanges. We also recently were fortunate to get awarded one …
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