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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest … growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … with the JGI Plant Annotation pipeline, which provides high quality comparisons of these genomes within themselves …
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Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
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Nigel Mouncey
… the fourth Director in its 27-year history. He has a wealth of managerial experience from almost 20 years in the … traits. Dr. Mouncey has successfully built integrated and highly effective multi-disciplinary teams, and today, … production with oxygen binding proteins. (2014) U.S. Patent Application US8741603 Fermentative vitamin C production. …
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JGI Hosts GPU Hackathon in May
DOE investments in graphical processing unit (GPU)-based high-performance computing resources, an upcoming hackathon … Computing Facility (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, aims to explore applications in the life sciences that can be ported to the …
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The future of legume genetic data resources: Challenges, opportunities, and priorities
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Expanding Virophage Diversity
… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … of Science facility, have increased the number of known high quality virophage genome sequences 10-fold through … early version of the paper at the 2018 Viral EcoGenomics & Applications (VEGA) Symposium. The work also used resources …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets with the …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting … industry, and government organizations for three days of scientific presentation, interactive panel discussions, workshops, and informal networking events. JGI will present both a genome center talk and a …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a … that showcase our collaborations and capabilities to enable great science that will help solve energy and … plant genomics community. The project’s aim is to generate high-quality genome assemblies and annotations for 35 …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Survey of Setaria's natural diversity reveals seed dispersal in … just a massive amount of sequencing.”  A Resource for Many Applications Kellogg noted that C4 crops have gotten a lot … efficient at photosynthesis, a concern as extreme weather events become more frequent. “A big part of the Danforth …
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DOE JGI Metagenome Workflow
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When “The Blob” Made It Hotter Under the Water
… impact on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave … of how marine microbial communities are affected by warming events. More time-series studies could help researchers … marine microbes and by extension, the ocean’s capacity to act as a carbon sink. Summary As global temperatures …
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