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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … He holds joint appointments as a Deputy Director at the DOE Joint Genome Institute, Senior Scientist at Lawrence …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on … SIP allows researchers to go beyond understanding which microbes are present in a sample, to generate data about … in proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Partners
… support plant and other efforts. The JGI works closely with DOE computational facilities (e.g., the National Energy Research … Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National …
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Fishing for Novel Cellulose Degraders
… for fly fishing is a boxful of lures. Designed with feathers or wires to mimic an insect or a particular movement, … led by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … Lab). Using a single-cell screen, they can now identify microbes with specific functional characteristics. When they …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm … but they’re not always immediately apparent. Similarly, the microbes found in plant roots may have unknown roles. Some … and Environment (INRAE) and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Natural Prodcast Episode 15: Katherine Duncan
… Hey, Dan. Dan Udwary: Today we’re going to talk to Kate Duncan. And Kate is– I should ask, you are Kate Duncan? … what’s important in terms of the chemistry produced by microbes. And by what’s important, I mean, like, where … has been really, really fun. Alison Takemura: And then does that also– well, I guess the question really is, do …
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Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes
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Synthetic Biology Informatics Group
… Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software includes: gRNA-SeqRET , an organism-agnostic …
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Accessibility/Section 508 Statement
… of Energy is committed to making its electronic and information technologies accessible to individuals with … or concerns related to the accessibility of this website to DOE Section 508 Coordinator mailbox.   For more information about Section 508, please visit the DOE Section 508 website. …
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A Powerful Technique to Study Microbes, Now Easier
… Lawrence Livermore National Lab biologist Jennifer Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in robots to help process experiments that measure microbial activity in soil. Now, the researchers …
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Micro-Scale Applications Group
… The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge … approaches.  Our group also seeks out new approaches that utilize microfluidics/microdroplet technology in order to … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline …
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