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Fishing for Novel Cellulose Degraders
A “bait and hook” single-cell genomic approach to bioprospecting. The Science … known to be key contributors to the planet’s biogeochemical cycles, but the vast majority remains uncultivated and … ecologists to learn more about the diversity of microbial enzymes, which could have a plethora of potential applications …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts in the field of viral …
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Three Join the JGI User Executive Committee
Chris Schadt of Oak Ridge National Laboratory and Elizabeth “Lizzy” Wilbanks of the University of California, Santa Barbara. They join eight other JGI users already serving on the UEC – go … He’s interested in how microbes influence biogeochemical cycles in soils and sediments and plant-microbial …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes … microbes, and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in … of microbes that play key roles in global biogeochemical cycles remains unexplored and uncultivated. Developing a …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have … viruses impact many ecological processes, including carbon cycles. “Whether or not you planned it, viruses are most … a broad range of environmental challenges, characterizing viruses is a key step. For decades, though, many …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … “These new CSP projects accelerate our efforts to characterize poorly-studied algal and viral genomes, and integrate … marine food web base, they also feature in many nutrient cycles. Thus, having reference  Chaetoceros genomes would …
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Taking Stock of the Known and Unknown Microbial Space
… diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of … the world, playing key roles in regulating global nutrient cycles. The information gained from understanding the … to clean energy generation and environmental characterization and cleanup. The JGI provides integrated …
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements metagenomics studies. The … indicating variation in gene flow between the analyzed community members. The Impact Though microbes help regulate the planet’s nutrient cycles and are potentially of use in fields ranging from …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book … whose presence or absence can impact the planet’s nutrient cycles. While most organism’s genetic information is encoded …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small city’s … and eukaryotes, and they range in particle and genome size from small, to large and even giant. The genomes of giant … communities and their roles in carbon and other nutrient cycles. “This is the first study to take a more global look …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
New 5-year strategic plan outlines how the JGI will advance the bioeconomy, leveraging … enhancing the JGI’s impact through communication, and maximizing stewardship of DOE resources. This approach, combining … the JGI’s ability to predict and respond to biogeochemical cycles, which builds on the DOE’s interest in mitigating …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect traits. In a … of letters A, T, C and G appearing over and over in a dizzying array of combinations, are unremarkable, save perhaps …
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