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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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Connecting metabolome and phenotype: recent advances in functional metabolomics tools for the identification of bioactive natural products
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MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets
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Comparison between Ribosomal Assembly and Machine Learning Tools for Microbial Identification of Organisms with Different Characteristics
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You Can Move, But You Can’t Hide
… created by researchers under the direction of Microbiome Data Science Group Lead Nikos Kyrpides at the U.S. … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory … for identifying viruses and plasmids. Until now, most other tools have focused on identifying only specific plasmids or …
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Three Join the JGI User Executive Committee
… The JGI User Executive Committee (UEC) recently welcomed three new … Society of America and is also a National Microbiome Data Collaborative (NMDC) Champion. As an early career … early career researchers and new users, advise on data release and sharing policies, and help develop programs …
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A Guide to Gene‐Centric Analysis Using TreeSAPP
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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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Introducing New Members of the JGI User Executive Committee
… The JGI welcomes three new members to the JGI User Executive Committee (UEC) : Roland Hatzenpichler of … in giving a voice to JGI users who feel that certain data sharing policies fail to represent the needs of large … unaware that [public but use-restricted] exist on [the JGI data portal] IMG or how to deal with situations in which …
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A Bioinformatician's Guide to Metagenomics
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Natural Prodcast Episode 6: Marc Chevrette
… pathways. So that’s kind of how I fell down the rabbit hole. I was curious about what they were, what they … and I’m really excited about it. Because now we have the tools through genomics, and metabolomics, to ask these … for a company. Personally, that was my first taste of big data if you want, maybe it’s medium data now. But at the …
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