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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… has closed at the U.S. Department of Energy (DOE) Joint Genome Institute, a DOE Office of Science User … their research projects through the DOE RENEW grant initiative when school starts in the fall.  Outside of the … Asaf Salamov, Igor Grigoriev Project:  Training new JGI genomes with Tiberius Brandon Imstepf Mentor: Brian Bushnell …
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Natural Prodcast Episode 9: Roger Linington
… products field as it relates to structure elucidation and genome mining, and how we might start to better connect … a podcast produced by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility … want to hear more science from her, check out her podcast, Genome Insider. She talks to lots of great scientists …
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2025 NeLLi Symposium
… students and postdocs): $250      Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and … cultivating new bacteria and archaea revealed by a recent genome census . A key outcome will be a a compelling …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … and developed new tools to map that soil RNA to fungal genomes.  The U.S. Department of Energy (DOE) Joint Genome … said, the 1000 Fungal Genomes project, together with other CSP projects, had sequenced over 2,000 fungal genomes. The …
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Transcriptional and metabolic stasis define desiccation-induced dormancy in the soil bacterium Arthrobacter sp. AZCC_0090 until water vapor initiates resuscitation
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the …   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to … Borevitz) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office …
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2022 Progress Report
… Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems … The vision of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … (Berkeley Lab), is to become the leading integrative genome science user facility enabling researchers to solve …
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Data Ecosystem
… analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and …
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Uncovering Novel Genomes from Earth’s Microbiomes
… methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … cannot be cultivated under laboratory conditions, their genomes can’t be sequenced using traditional approaches. … fields. A public repository of 52,515 microbial draft genomes generated from environmental samples around the …
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JGI@25
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Applying Viral Genomics Expertise to Understanding the Human Virome
… order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic …
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Simon Roux
… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development … and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research Program, Dr. Roux established … and bacteria. PLoS Biology 21, e3002083 Roux et al., 2021. Ecology and molecular targets of hypermutation in the …
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