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… browser that allows other researchers to study the genomes and predict the metabolic abilities of these … GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. They also … more than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible …

… to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples around the … and already available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Nikos Kyrpides and  … and improve the quality of metagenome-assembled viral genomes. The paper appeared in  Nature Biotechnology . Igor …

…   On November 3, 2021, the JGI and the Workforce Development & Education …

… and assumed the Deputy Director of User Program position in 2021. In addition to her JGI appointment, she also holds an … and Bioinformatics at Virginia State University (2021-current). Editorial Board Member for ISME J (Senior Editor 2016-2021), Peer J (2015-2019), Scientific Data (2017-2019). …

… Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … products. Proceedings of the National Academy of Sciences. 2021 May 4;118(18). https://doi.org/10.1073/pnas.2019855118 … metabolism in an anoxic wetland soil. Nat Commun. 2021 Apr 29;12(1):1-6. …

… of chromosomes (they are “polyploid”) and their complex genomes are more difficult to sequence and assemble, in turn … now underway as part of the JGI Community Science Program (CSP), a critical factor in developing sugarcane as a … modern sugarcane cultivars are hybrids, each with more than 100 chromosomes; assembling a sugarcane genome is incredibly …

… and genome size from small, to large and even giant. The genomes of giant viruses are on the order of 100 times the size of what has typically been associated with viruses, while the genomes of large viruses may be only 10 times larger. And …

… eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to … E. grandis TAG0014 HAP1 and HAP2 genomes (2025 assemblies) …

… version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version … website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 …

… and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research Program, Dr. Roux established … and bacteria. PLoS Biology 21, e3002083 Roux et al., 2021. Ecology and molecular targets of hypermutation in the … the quality and completeness of metagenome-assembled viral genomes. Nature biotechnology 39, 578-585. Roux et al., …

… workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic …

… results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for … most species do not grow easily in the lab. To access the genomes of uncultured  microbes , scientists usually employ … like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital …