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Webinar: PhycoCosm Tutorial
… data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. … for the answer provided by Sara 4.  Q(uestion): Are all CSP produced data automatically assembled and run through … on the synteny page. 7.  Q: What is the success rate for CSP? What makes a successful CSP? A: Reminder: two calls for …
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JGI Scientists Pen Genome Watch Articles
… Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … pathogen biology. Du Toit invited JGI to write half of the 2019 Genome Watch articles as a way to expose readers to a … so far selected the authors of these pieces to represent diversity in research area, gender, as well as stage of …
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Genome organization and botanical diversity
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along … aspect of viruses in the environment — their sheer genetic diversity. As pioneers of this field, the JGI has leveraged … the world, finding over 125,000 partial and complete viral genomes. That study multiplied the number of known viral …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… in genomics, including JGI, is not representative of the diversity in the population, especially here in California. …
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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE … Changes during Leaf Senescence in  Populus 8:03 PM Natural Diversity in  Setaria  and a Novel Gene for Shattering   In …
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CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
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Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC
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Making a Lichen Together
… For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … lichens. Studying the symbiosis by investigating a lichen’s genomes and transcriptomes could help inform efforts at … how lichen is able to survive drying out to a potato-chip level of crispiness, only to revive in mere seconds or …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden … family of enzymes is critical to the synthesis and broad diversity of terpenes. Until recently, studies of the TPS … C. citriodora suggest that these plants synthesize a high level of secondary metabolites which play a part in biotic …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics … global metagenomics. Nature . 578:432-436 Roux S. et al. 2019. Cryptic inoviruses are pervasive in bacteria and …
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Learning to Look
… Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers … will have all of these features. As described July 22, 2019, in  Nature Microbiology , a team led by scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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