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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… previously unseen — is, in fact, a microscopic water mold, genetically related to such aquatic species as diatoms and … relative of SOD is P. infestans , responsible for the mid-19th century Irish potato famine.   Shortly before the … All told, the disease has accounted for upwards of $30 billion in losses , including the death of tens of …
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Making a Lichen Together
… and the microalga,  Asterochloris glomerata . To see how gene expression changes when living together versus apart, … of the results were unexpected. For example, lichenologists generally anticipated that in this symbiosis going back hundreds of millions of years, accidental gene swaps via horizontal gene transfer would have occurred …
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Transposon Mutagenesis Paired with Deep Sequencing of Caulobacter crescentus under Uranium Stress Reveals Genes Essential for Detoxification and Stress Tolerance
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Gene Expression: From On-Off Switch to Dial
… Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science Scientists have developed a more nuanced library approach to tuning gene expression in metabolic pathways. Compared to the … Force Office of Scientific Research under Award No. FA9550-14-1-0089, the Camille and Henry Dreyfus Foundation, and the …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford Human Genome … co-led the team that finished the DOE human chromosomes 5, 16, and 19. Following the completion of the Human Genome … simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, …
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Yellowstone Lake Nanoarchaeota
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Insight Into the Molecular Mechanisms for Microcystin Biodegradation in Lake Erie and Lake Taihu
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Seven genome sequences of airborne, bacterial isolates from Antarctica.
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and … The ability to accurately edit genomes (that is, repair gene mutations, and either delete or add genes in a precise … to be unearthed in sequencing and analyzing uncultivated microbes. Summary The CRISPR-Cas system is an immune …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… As warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to some of the largest food webs … microbiomes that influence algal diversity and gene expression. Sailing from pole to pole on four research … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
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Biogeochemical Cycling by a Low-Diversity Microbial Community in Deep Groundwater
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