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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… work to create FAIR datasets to maximize returns on these advances. Over the last two decades, Stable Isotope Probing … and participation — is especially important in microbial ecosystems. These communities harbor tens of thousands of … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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iPHoP: A Matchmaker for Phages and their Hosts
… more of these viruses than ever before, in all kinds of ecosystems. However, matching these viral genetic sequences to … is crucial to understanding what these viruses can do. Building on existing virus-host prediction approaches, … different routes. To train the model, the team used 1,870 known virus-host pairs to generate a matrix of data points.  …
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Tracking the ancestry of known and ‘ghost’ homeologous subgenomes in model grass Brachypodium polyploids
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Uncovering Novel Genomes from Earth’s Microbiomes
… methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … from environmental samples around the world, expanding the known diversity of bacteria and archaea by 44%, is now … MAGs. Modeling A New Path for Metagenomics Researchers Building upon these resources, KBase, a multi-institutional …
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Institutional User Agreements
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … to support a forest, and species vary across Earth’s ecosystems.  Recently, in work  published in  New … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Products
… and quality of finished product depend on genome. Selected genomes will be improved based on feasibility and scientific … Single Particle Sort Draft quality assembly of amplified genomes from sorted cell(s)/particle(s), many unordered … Single Particle Sort Draft quality assembly of amplified genomes from sorted viral particles, unordered contigs …
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Synthetic biology open language (SBOL) version 3.0.0
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Advancing Genome-Resolved Metagenomics beyond the Shotgun
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… improving connectivity across the DOE data ecosystem, building and harnessing partnerships, enhancing the JGI’s … the bioeconomy. Functional diversity theme. Reading the genomes of individual organisms or environmental DNA, and … detection and prediction strategies for types of as-yet unknown pathogens. The JGI’s advanced data integration and …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern … grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, land plant evolution. Recent … bacteria. The insertion of transposable elements — also known as “jumping genes” because they can change position …
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Nikos Kyrpides
… the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in … BA in Biology, Aristotle University of Thessaloniki, Greece PhD in …
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