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MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… applied to samples collected from acidic iron-oxide microbial mats in Yellowstone National Park over time, … and characterized a novel phylum-level lineage of archaea with at least two major subgroups dubbed Marsarchaeota. The … the JGI’s Community Science Program , the team used metagenome assemblies, transcriptomes and single amplified …
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The Integrated Microbial Genome Resource of Analysis
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A Comparison of Microbial Genome Web Portals
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Applying Viral Genomics Expertise to Understanding the Human Virome
… order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The Program aims to better understand the viruses that coexist with humans – the …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different lifestyles. The Science The bacterium SAR324 … periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … transcriptome data were generated, bioinformatic tools for binning metagenome data involved with mainly eukaryotic … known fossil record of land plants and evolved in early microbial biocrust environments.     …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … found inside mitochondria, the energy-producing structures within cells. This is the largest dataset of its kind ever … ribosomal RNA sequences. The next step applied metagenomic binning (grouping sequencing reads by their likely organism …
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A single-cell genomics pipeline for environmental microbial eukaryotes
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A metagenomic perspective on the microbial prokaryotic genome census
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Overview of Laboratory Workflows for Microbial Single-Cell Genomics
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program … the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the … Inc. in Chicago, IL. He did his postdoctoral studies with Carl Woese at the University of Illinois at …
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