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… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving … of ecological and evolutionary parameters driving virus:host dynamics in environmental microbial communities. … characterization of molecular mechanisms involved in virus:host interaction and host cell take-over by viruses, and …

… are crucial for advancing the bioeconomy, environmental sustainability, and improving bioenergy crops. … The Metabolomics Program is focused on understanding the critical roles of metabolites in … as they relate to DOE missions in the bioeconomy, sustainability, and environmental research. This program …

… interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  … v13. Below are some answers to Frequently Asked Questions about the transition from Phytozome v12 to v13. Why is it … The ability to user query sequences to gene families What about PhytoMine? PhytoMine, the Phytozome implementation of …

… into data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. … in tackling grand challenges in Biology, with a special focus on microbiome research.  These efforts include … genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts …

… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic … bulk of which belong to only three phyla. The Woyke group uses single-cell sequencing as a means to begin filling this … A more recent effort in the Woyke lab is therefore focused on the application of  function-driven single-cell …

… many different ways of processing nitrogen. To boost crops more efficiently in the future, the evolutionary past … enzyme family evolved across 90 species. “One unique thing about this work was our focus on all the kingdoms, including animals, plants, bacteria, …

… from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in … home located in the heart of the Berkeley Lab main campus. On Monday, November 11, a week after they’d been  moved … runs before the end of the week. “One week up and operating is a great story and a testament to our extensive …

… Learn more about JGI’s  PhycoCosm data portal , an interactive … trees are incorrect or need to be changed, please contact us and we’ll work work it out 2.  Q(uestion): Do you publish … is not based on a genome model with PhycoCosm, how do we go about getting it in your system? A: I think the best way is …

… development program for higher education that develops skills in fungal biology and genomics.  Myco-Ed :  The … participants. Over the past two years, Myco-Ed has been used in 15 individual classrooms across the country, … a national network. Myco-Ed and MICROnet, in theory, are operating in parallel. While KBase does not currently have …

… different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific … surface, to the blue-lit twilight zone, to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. … the metabolisms that SAR324 and other microbes use could inform scientists’ understanding of carbon fluxes …

… Learn more about JGI’s  MycoCosm data portal , an interactive … genome sequencing, or only “true fungi”? A(nswer): Our focus is on fungi, algae, plants, and the microbial world but … factors. Peptidases and transporters are assigned using MEROPS ( https://www.ebi.ac.uk/merops/ ) and TCDB ( …

… Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the … Summary As the planet has changed, so have plants. Curious about their ability to adapt to changing environments, … and in flowering plant lineages.   With the information about  Marchantia -specific innovations and adaptations, …