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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific community as a … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and …
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … But, say, the last time I checked, it was on the order of 10,000 species. And whenever you’re talking about a new … end, we took an approach that was kind of a simplified metagenome sequencing approach to pick this system apart.  DAN:  …
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Frequently Asked Questions: Proposal Submission
… on our YouTube channel as well as in this episode of our Genome Insider podcast.  You can also contact … range from raw sequence data to well-annotated assembled genomes to synthesized DNA constructs to metabolomics data, …
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THE Bioenergy Tree
The US Department of Energy’s favorite tree is poplar. They’re the fastest growing trees in the Northern … remarkable genetic secrets that bring us closer to making poplar an economical and sustainable source of energy and …
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Katherine Louie
… analysis, creation of large metabolite databases by running 1000s of metabolite standards, and development of … untargeted analysis pipelines.  Beyond profiling over 10k samples/year, Dr. Louie and her team work with other JGI … natural products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the … (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of … Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … to terrestrial habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … and developed new tools to map that soil RNA to fungal genomes.  The U.S. Department of Energy (DOE) Joint Genome …
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Tanja Woyke Elected to American Academy of Microbiology
… genetic material of uncultivated microbes and link their genomes to the roles they play in the environment. One … in Nature , applied single-cell sequencing to decode genomes of bacteria and archaea from previously understudied … proteins, and virus diversity in this group expanded 10-fold, offering the opportunity to refine the phylogenetic …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … of those shared by both humans and flowering plants). Its genome also contains hundreds of genes uniquely associated … specific algae. The reference genome is cited in roughly 10% of all since-released publications on green algae. “The …
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Publication Policy
… assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI … be found at the top of the proposal info page on the JGI Genome Portal. You can navigate to the proposal info page using any of the below methods: Search the Genome Portal Navigate to the JGI Genome Portal . Click …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. … by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) representing new …
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