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The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … with 600 instructors worldwide who work with more than 10,000 undergraduate students each year. Brian Looney of … which species of mycorrhizal fungi are important for poplar plant health, in part to learn how these species can …
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Ian Blaby
… 2019 Dr. Blaby heads the Biodesign Platform at the Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain … energy. Plant biotechnology journal . 14: 1, 22-28. 2016 Blaby et. al., Genome‐wide analysis on Chlamydomonas …
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Workforce Development & Education Outreach
… Outreach at JGI takes many forms: We offer internship opportunities through working directly with specific universities, continuing education programs in the Bay Area, and established programs affiliated with the Berkeley … The CalTeach Summer Research Institute (SRI) at UC Berkeley is a program …
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Common bacterial responses in six ecosystems exposed to 10 years of elevated atmospheric carbon dioxide
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Improving the Cacao Genome and Phytozome
… exist without cocoa.  But today the plant is under threat due to climate change and devastating fungal … That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest buyers of cocoa, is … will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao …
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JGI@25: Studying Sorghum’s Survival Skills
… climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in common … for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have cited that … sorghum plants in drought conditions for three years (2016-2018) in the field in Parlier, California at the UC …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured … from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their … — before stepping into his role as program manager in 2006 when the JGI transitioned from human to microbial …
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Natural Prodcast Episode 9: Roger Linington
… Columbia, Canada. This is the last of the podcasts we recorded in my hotel room at SIMB, or the Society for … products field as it relates to structure elucidation and genome mining, and how we might start to better connect … accurate. And so we told people that if they would curate 1000 entries, that that would earn them authorship of the …
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Katherine Louie
… metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for community … analysis, creation of large metabolite databases by running 1000s of metabolite standards, and development of … untargeted analysis pipelines.  Beyond profiling over 10k samples/year, Dr. Louie and her team work with other JGI …
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A More Intuitive Phytozome Interface
… portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become the current, and only, … website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … v12 was first deployed (as the foundation for Phytozome v10) back in 2014.  Several components of that codebase are …
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Organic sulfur fingerprint indicates continued injection fluid signature 10 months after hydraulic fracturing
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