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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific contribution? This session will demonstrate to students (and their mentors) how to begin establishing a …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… vigilant stewardship as JGI’s Operations Deputy has come to a close as this previously retired Naval Commander … as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – … by the leadership of the DOE Office of Biological and Environmental Research: Sharlene Weatherwax; Associate Director …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
On February 17, 2021, JGI and the Environmental Molecular Sciences Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources … just one research proposal. Guest speaker Michelle O’Malley of UC Santa Barbara talked about how her approved FICUS …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with … the genomes and predict the metabolic abilities of these microbes. The Impact This study illustrates how the research …
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A Complex Confection Decoded: Sugarcane Reference Genome
… reference quality genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science … most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in …
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10 From JGI on the 2019 Highly Cited Researchers List
Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly … in the Methodology section as “those that rank in the top 1% by citations for papers published and cited between … Nature Genetics, the work is part of a long-term project to sequence, annotate and analyze the genomes of more than 300 …
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The JGI Data Portal: Improving User Experience
… download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is currently only … from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a … of DOE missions related to clean energy generation and environmental characterization and cleanup. The JGI provides …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
Genomics Capabilities Webinar inviting researchers to submit white papers to the Community Science Program’s  … really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard … the researchers will receive a FedEx package with the sequenced, quality controlled population representing the …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that …
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FICUS Overview
… for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National …
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Uri Neri
… days wrangling viral genomes and occasionally remembering to document his code. At JGI, he develops tools for viral … just "spicy messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our code would …
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