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… synthesis support, sequencing, integrative -omics, and data mining, empowering research collaborators to take on … PI on this project. “I view the program as an excellent platform to build collaborative research initiatives.” Yasuo … — and their applications — are evolving. “JGI is famous for its work sequencing human and environmental genomes. But …

… model, researchers also generated the first transcriptomic dataset of sexual reproduction in early fungi and discovered genes that are critical for this process. The Impact In the absence of the … with the fungi and bacteria, while the DOE JGI team sequenced and annotated a host genome (Rm ATCC 52813) as …

… regulation is critical to ensuring genes vital for growth and survival across various environments are expressed when their functions are needed. Data yielded through RIViT-seq expand the known … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …

… in graphical processing unit (GPU)-based high-performance computing resources, an upcoming hackathon led by … JGI hackathon is particularly focused on developing bioinformatics applications instead of on simulation codes. “JGI … is one of the largest producers of environmental genomics data and has a strong reputation in the community,” said JGI …

… always found among and within poplar trees, and in an effort to understand its influence on the plant, a team of … — scientists can better fine-tune their engineering efforts of both plants and root microbiomes to grow energy … in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team found that, …

… microbial mats at Yellowstone offer researchers an analog for studying early Earth conditions. Additionally, … high-temperature (thermophilic) microbes are of interest for their potential use in number of biotechnological … thousands to millions of copies of a particular DNA sequence from just a few pieces of DNA. Summary The extreme …

… students coming to the DOE Joint Genome Institute for research and training experience funded by a DOE … the User Support Analysis team to analyze plant microbiome data via programming languages like Python. The more … the supervision of their mentors, they were responsible for all steps of the experiment from growing and inoculating …

… Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with interactive web-based tools for comparative genomics and community annotation. Presented …

… revealed that just a handful of enzymes are needed to transform zealexins and related precursors into a bonanza of … the protective function of zealexins and related compounds for other plants, including those cultivated for bioenergy. … the ability make zealexins, and harnessed gene expression data from these lines to identify genes associated with …

… works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement for plants. As part of that partnership, the JGI and … to link experimental evidence across species. Centralized databases with large-scale transcriptome projects such as …

… of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of … , which can have pronounced ecological and evolutionary consequences. A previous study conducted by our research team … by our new switchgrass manuscript , we plan to use existing data as well as generating additional genomic resources to …