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The fungus that made itself at home
… from similar organisms, researchers have gained insights on why the dry rot ( Serpula lacrymans ) is so destructive in … plant mass for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the … Serpula species, S. himantioides from Europe, that was sequenced and analyzed by the JGI. The researchers found …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome … of France’s Institut de Biologie. His team proposed to sequence  Chaetoceros microalgae, or diatoms. Through the …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for … , which can have pronounced ecological and evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic diversity across the natural range of switchgrass found that …
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MGM Workshop at Fisabio Summer School
… June 24-28: Module 2/Microbial Genomics & Metagenomics Workshop The workshop is addressed to students and professionals of biology, biomedical research, the health sciences and …
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The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses.
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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to … the HGP, the JGI has sustained its commitment to uploading sequence data generated on behalf of its user community to … first. For nearly 40 years, the International Nucleotide Sequence Database Collaboration (INSDC) has managed the …
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Tracking the Origins of Methane-Producing Microbes
… archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … recent studies now suggest the gene cluster predates this microbial group. Recently published in the Proceedings of … the microbes into small pools of cells that were then sequenced separately. From these samples, 111 …
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Len Pennacchio
… Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … Scientist at Lawrence Berkeley Laboratory, and Adjunct Professor at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI resources and … high-quality outputs, such as data, publications and software. The JGI supports the entire data life cycle, and …
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Methane Makers in Yosemite’s Lakes
… and met local wildlife (a marmot!) as they’ve sampled the microbial communities living in the mountaintop lakes of the Sierra Nevada mountains. These lakes are isolated, …
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