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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … our near- and long-term goals. And, by the way, as far as sequencing goes, the JGI’s next petabase will likely be …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… little makers rely on to survive. Now, new research enabled by the U.S. Department of Energy (DOE) Joint Genome … started by collecting samples from Yellowstone’s hot springs, an extreme environment with low genetic diversity that … methanogens were, but they were discovered by genome sequencing, which is a much less biased approach to studying …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions are available) … resources. Q:  Where can I get information for funding by JGI? A: The JGI is not a funding organization. Rather, it makes its sequencing, synthesis, metabolomics and data analyses …
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iPHoP: A Matchmaker for Phages and their Hosts
… are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these viruses … can result in different predictions. The iPHoP program brings several of these approaches together into the same … program,  described in Plos Biology , the research team led by scientists at the U.S. Department of Energy Joint Genome …
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Frederik Schulz
… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His … Krinos et al. 2024. Time-series metagenomics reveals changing protistan … Senior Editor, ISME Journal LBNL LDRD (Soil Protists) FY2022 LBNL LDRD (Viral Variant Surveillance) FY2021 Austrian …
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Nick Everson
… Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include … He previously served as JGI’s Business Manager from 2007 to 2012, overseeing all financial and logistics … Laboratory in 2015 Served on the Council of UC Staff Assemblies (CUCSA) from 2015 to 2018, representing Berkeley …
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Webinar: SIP technologies at EMSL and JGI
… least a microgram of DNA in the tube so you’d need at least 2 micrograms in the sample to start with. 2. Q: What would a … go from start to finish, i.e., QC to separation to library sequencing and assembly. Like others, our turnaround time has been impacted by the pandemic. 3. Q: What instrument / method does the JGI …
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An Integrated Dataset to Understand Ecosystem Interaction
… to large ecosystem-level processes for the first time. By collecting data from 27 different poplar ( Populus … the trees were turned on or off in response to its surroundings — illuminating the molecular mechanisms for adaptation … generated is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were provided by …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… and environmental challenges. Switchgrass is a native, shrubby grass that can grow year-over-year on marginal soil and … and model species. The following year saw the beginnings of common switchgrass gardens to track crop productivity … reference genome built off more than a decade of work; as sequencing technologies advanced, assembly and annotation of …
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Fungal Friends or Foes in Plant Roots
… office building, its roots are akin to the ground floor lobby. People walking into the lobby have many reasons for … Berkeley National Laboratory (Berkeley Lab). Their findings were described in a recent Nature Communications paper . … consisting of fungal species from natural Arabidopsis populations around Europe. The JGI sequenced and annotated …
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Yasuo Yoshikuni
… has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of … discovery and applications. This program has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni … et al. Intersubunit Coupling Enables Fast CO2-Fixation by Reductive Carboxylases., ACS Central Science , 2022 …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … scientists to study microorganisms that can’t be cultured by analyzing and then extrapolating data obtained from … small DNA fragments into larger and coherent pieces called contigs — into genes and even into genomes — from these …
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