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Beyond linear sequence comparisons: the use of genome-level characters for phylogenetic reconstruction
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Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary
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Deciphering the evolution of flavin-dependent monooxygenase stereoselectivity using ancestral sequence reconstruction
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Fast and accurate identification of plasmids and viruses in sequencing data using geNomad
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. … regulation is critical to ensuring genes vital for growth and survival across various environments are … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …
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Genomic profiles of four novel cyanobacteria MAGs from Lake Vanda, Antarctica: insights into photosynthesis, cold tolerance, and the circadian clock
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JGI announces final round of 2022 Functional Genomics awardees
… Twice each year, the JGI accepts proposals for state-of-the-art functional genomics research from … and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the final six …
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Matthew Kellom
… Matt is broadly interested in the interactions between … life and environment, and using metagenomics to study these complex natural systems. Microbial communities living in … Matt also supports various CSP and FICUS user projects for the Metagenome Program. …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between … successfully automated aspects of a commonly-used process for studying microbial communities, with results published … study microorganisms. Because microorganisms live in complex communities, like within soils or the gut, they are …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… Antarctic algae need their vitamins; zinc fuels some of … other oceans. That zinc turns out to be extremely important for polar phytoplankton.  After peering into the function … collaboration, in 2017, they published the first genome sequence of a cold-adapted microalga: the diatom …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in the …
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Overview of the Genomes OnLine Database (GOLD)
… TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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