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Training the Next Generation of Talent
… Olmstead was back on campus at the University of California, Merced to start orientation as a first-year graduate … the first participants in the DOE JGI/University of California, Merced Genomics Distinguished Graduate Internship … says. “Many academic labs don’t know how to analyze RNA-Seq data very well, sending it out to companies. I’ll take that …
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint Genome Institute, where he leads three … strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. … with a view to developing a deeper understanding of sequence-based gene function. …
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Crawling through time: Transition of snails to slugs dating back to the Paleozoic, based on mitochondrial phylogenomics
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… in regulating microbial cellulose production and biofilm formation, which affects a number of environments, including … Ec YcgR, within the Nano-lantern scaffold. They then mined sequence databases for homologous YcgR proteins and chose a set of 92 …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an … that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over … of rumen-digested switchgrass, researchers isolated and sequenced DNA from rumen microbes involved in the digestion …
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate … it in the deep ocean. With genomic samples collected before, during and after The Blob, researchers developed a … samples. Genomic DNA extracted from the water samples were sequenced by the U.S. Department of Energy (DOE) Joint …
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Neha Varghese
… Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user …
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Gene Expression: From On-Off Switch to Dial
… approach to expression, scientists can now opt for various shades of grey. The ability to fine-tune the … that were missed using traditional approaches. This novel form of intermediate expression, when used in addition to … Metabolic engineering could lead to sustainable pathways for making high-value bioproducts including biofuels. In …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There … Investigators with DOE mission-relevant projects that call for expansive sequencing, synthetic biology, and …
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Introducing New Members of the JGI User Executive Committee
… of members. Each of the researchers had particular reasons for wanting to serve on the UEC. Hatzenpichler, who studies … in giving a voice to JGI users who feel that certain data sharing policies fail to represent the needs of large … systems, noted that she would like to help advance JGI efforts aimed at “understanding complex communities and …
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JGI Accepts 17 Proposals for Community Science Program
… on harnessing genomics to developing sustainable resources for biofuels and bioproducts. Andrew Nelson of the Boyce … tolerant shrub. Melissa Roth of the University of California, Berkeley aims to redesign and engineer algae by … collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently burned …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Hour mentioned that she had gained knowledge in bioinformatics and machine learning. “Also,” she added, ”I’ve developed efficient skills in working with high performance computing and had an amazing opportunity to … and Identification of Mitochondrial Plasmids from DNA Sequence Moitrish Majumdar Mentors: Bikash Shrestha, Crysten …
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