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Reversal of carbapenem-resistance in Shewanella algae by CRISPR/Cas9 genome editing
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Busting the Unbreakable Lignin
… oxygen and make use of it, it would change the entire landscape of biomass production and bioproduct engineering. … with researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … (MAO), National Science Foundation grant MCB-1553721 (MAO), Office of Biological and Environmental Research …
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David Goodstein
… equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to facilitate … gene models in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative … in Physics, Cornell University, NY … RJ Craig et al., 2023.The Chlamydomonas Genome Project, version 6: Reference …
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JGI & KBase at PAG XXVII
The Plant and Animal Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE … Overview and Joint Genome Institute Plant Program Update 6:33 PM Comparative Genomic and Transcriptomic Analyses for …
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Evolution of a Fungal Gene Expression Regulator
… in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures … Impact Interactions between plants and fungi run the gamut from mutually beneficial to antagonistic. In fungi, 5mC is … US Department of Energy under contract no. DE-AC02-05CH11231. The Georgia Advanced Computing Resource Center (GACRC) …
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Marine Synechococcus isolates representing globally abundant genomic lineages demonstrate a unique evolutionary path of genome reduction without a decrease in GC content
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DOE Metrics
… % Goal FY 2025 Total 700.0     8,585     Q1 2025 175 190.304 109% 2,164 2,136 98.7% Q2 2025 175 152.100 87% 2,117 … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … Hours reflect a delay in implementation of the LIMS from Q2 to Q3. As a result of the delay in the LIMS …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 2022 marks the JGI’s 25th anniversary. Over the last year, … it’s possible that fungal communities — or enzymes from fungal communities — could pave the way for many … But there’s opportunities for borrowing and porting parts from nature — enzymes, transporters, pathways — into …
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Ancient Algae Reveal Secrets of Plant Evolution
… enhanced our understanding of how early plants transitioned from water to land. Key gene groups involved in stress … Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Science Foundation (NSF) CAREER award (DBI-1652164, 1933521), the Nebraska Tobacco Settlement Biomedical Research …
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JGIota: Looking Back at Sequencing for Soybeans
… crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full … threatens this important crop. Hear more about that work from researchers Gary Stacey (University of Missouri), Peter …
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Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens
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Comparative Genomics of the Pine Pathogens and Beetle Symbionts in the Genus Grosmannia
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