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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea … shed light on the global biogeography in the haloarchaeal gene pool, a team led by University of New South Wales … are available through JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) platform. These data allowed researchers …
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JGI@25: Solving the Mystery of the Missing Oil
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … To find an explanation, his team tracked the thousands of bacterial and archaeal species using a DNA-based array …
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VEGA Symposium
… here  Registration fees:  Early Bird rates available now General & Berkeley Lab Attendee – $250 Students & Postdocs – $200 Regular Rates (begin September 19, 2026) General & Berkeley Lab Attendee – $300 Students & Postdocs – … VEGA 26 will take place at the UC Berkeley MLK Building, in the East Pauley Ballroom, November 18–19, 2026. The …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI … Nayfach and  Nikos Kyrpides , was  recently published in the journal  Annual Review of Biomedical Data Science . … piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since early …
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Genome Insider
… The Genome Insider podcast brings listeners into the science that the JGI makes possible. … — and dives into their work on all kinds of organisms, from plants and fungi to microbes and viruses. Listen in to …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… around the country recognize that crop varieties grow best in certain regions. Most plant species have adapted to their local environments; for … to customize the crop for additional end products. The genetic diversity within this set of plants, each with a … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant … Canal System,” focuses on anthropogenic impacts on wetland microbiome composition and metabolism, work on which she is … between the two institutions to help train the next generation workforce.     …
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The … developing a number of resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather … and evolutionary genomics .” Understanding the nature and genetic basis of functional traits in sphagnum growth and …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth … And that led me to get even more interested in how general environmental stressors, um, alter microbial biomass … could become more sustainable through applications of microbiome science; our water quality, our water resource …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … perform functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps … scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group led by Nikos Kyrpides. To …
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Busting the Unbreakable Lignin
… evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main ingredients to tackle when it comes to breaking down a … JGI data portals and pipelines helped identify potential genes responsible for lignin deconstruction. (The JGI also …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse … of the Institut Pasteur in France, the importance of methanogenesis and the presence of methanogens in nearly all types … “Distribution of predominant high-temperature archaeal and bacterial lineages in Yellowstone National Park,” as well as …
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