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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that … it, viruses are most likely in your system and in your data, and they’re probably influencing the microbes there,” … challenges, characterizing viruses is a key step. For decades, though, many viruses have been somewhat …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most … Amplification to generate enough DNA to put on a sequencer. As previously mentioned, it’s a method that’s … like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital …
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JGI on the 2021 Highly Cited Researchers List
Congratulations to the 2021 Highly Cited Researchers at the JGI! They are among those recognized by Clarivate Analytics for demonstrating “significant influence in their chosen … multi-institutional research team that combined field data with a reference switchgrass genome to associate …
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Biotech Partners Summer Intern Co-Authors NAR Paper
Research publication. The paper describes the version 6 data updates and feature enhancements to the Genomes OnLine … exercise helped us in filling or updating geographic information for nearly 1,100 samples,” said Reddy. Kaushal also reviewed …
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Three Join the JGI User Executive Committee
… and Elizabeth “Lizzy” Wilbanks of the University of California, Santa Barbara. They join eight other JGI users … Society of America and is also a National Microbiome Data Collaborative (NMDC) Champion. As an early career … Greenham stepped down at the end of her term. In late 2023, the JGI launched a solicitation for nominations for …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… to spread across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. polymorpha has been used as a … framework provided by these high quality reference genome sequences could help researchers better understand related … US Department of Energy operated under contract no. DE-AC02-05CH11231. This project received funding from the …
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Busting the Unbreakable Lignin
… to tackle when it comes to breaking down a plant for energy: Cellulose, hemicellulose and lignin, … Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes … Research of the U.S. Department of Energy grant DE-SC0020420 (MAO), Institute for Collaborative Biotechnologies …
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A Social Science Experience
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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Mindfully Moving JGI
Walnut Creek, after countless generations of sequencing platforms (up to 120 sequencing machines at maximum) maintained by a workforce that numbered more than 100 at its peak, all the … been  moved to Berkeley , two of the JGI’s sequencing platforms were turned back on. A third sequencing platform was …
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DOE JGI Interns Share Their Summer Experiences
Many of them spent the summer crunching genomic data at a computer; a few had the opportunity to spend time … analyses at their desks. As part of the DOE JGI’s efforts to promote diversity and inclusion in the sciences, … Cristhian Gutierrez and Bryan Rangel Alvarez are both  California Alliance for Minority Participation (CAMP) students …
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