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Cultivating Symbiotic Antarctic Microbes
… in understanding the genomic basis and ecological consequences of microbe-microbe interactions. Using metagenomes … have adapted to thrive in polar ecosystems. The work by Cavicchioli’s team sheds light on the range of archaeal … , a team led by Rick Cavicchioli at the University of New South Wales along with researchers at the U.S. …
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Forming Scientific Connections and Building Community
… workshops, data carpentry hackathons, and also made new friends while working on their summer projects. Watch … research is very sentimental to me.” Mentors: Crysten Blaby-Haas & Bikash Shrestha Project: “ Detecting Isotope Bonds … Project: “ Improving biosynthetic gene cluster annotation by leveraging a large genomic model ” Leonel Gonzalez : …
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Making a Lichen Together
… are able to partner to form lichens. Studying the symbiosis by investigating a lichen’s genomes and transcriptomes could … Summary To shed light on lichen, an international team led by Daniele Armaleo, a biologist at Duke University, … nitrocellulose filters in Petri dishes. The scientists also sequenced the fungus and photobiont’s genomes and compared …
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In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… are difficult to study in the lab. Metagenomics provides new views of these relationships.  Recently , researchers … Then, using metagenomes and metatranscriptomes generated by the U.S. Department of Energy (DOE) Joint Genome … with their hosts. … This research was supported in part by the Allen Distinguished Investigator Program, through The …
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Game On: High School Students Drive Everglades Metagenomics Study
… samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed the soil samples, the JGI offered 7 … and Proteobacteria to be the most common phyla of bacteria sequenced from the metagenomic soil samples from the four … to the body of scientific knowledge that can be accessed by the rest of the community. These high school students now …
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Triggering Morel Fruiting
A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences … M. importuna CCBAS932 from the forests of France, were sequenced and annotated by a collaborative team. The genome sequences and annotations are available on JGI’s fungal …
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UC Merced Interns Reflect on Their JGI Summer Projects
… students worked on ranged far and wide — from implementing new data visualization tools, to using natural language … more about their work here in a series of videos produced by JGI Communications & Outreach intern Ashleigh Papp. The … out the short videos highlighting the exciting work done by the 2020 cohort of JGI-UC Merced interns .   by: Ashleigh …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… their JGI mentors, what challenges they overcame, and what new skill sets they look forward to taking back to school.  … and I look forward to keeping them in my network.      Byline: Ashleigh Papp …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
That study multiplied the number of known viral genes by a factor of 16. The same year, the JGI expanded its … have better, easier access to these viral genomes. The new database was called IMG/VR. It featured samples from … so many genomes, JGI researcher Antonio Camargo developed a new pipeline for identifying viruses across many thousands …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… proposal call is open year-round, but proposals submitted by July 30 will be included in the next review. “So webinars … first of the Functional Genomics call’s approved proposals by a consortium. The consortium looked at how different … the researchers will receive a FedEx package with the sequenced, quality controlled population representing the …
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Ancient Algae Reveal Secrets of Plant Evolution
… plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal … Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which … plant resilience and productivity. The algal genomes sequences are available on the JGI’s  PhycoCosm portal. … …
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