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JGI Hosts GPU Hackathon in May
… Computing Facility (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, aims to explore … and the code owners will be able to get assistance from mentors and a team to port their code to a new …
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Adam Reisselman on being a 2016 DOE Computational Science Graduate Fellow
… The Department of Energy's Computational Science Graduate Fellowship (DOE … meet the Nation's growing need for science and technology professionals with advanced computer skills. During the summer … of 2016,  DOE CGSF recipient Adam Riesselman of Harvard University worked with DOE JGI's Sam Deutsch. Learn more …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … (Andrew Tritt of CRD and, independently, Ying Zhang of the University of Rhode Island), and to bin metagenomic contigs …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … of this work.  Han is an Assistant Professor at Konkuk University in South Korea as well as a faculty affiliate in … found that these enzymes have evolved distinctly from both core and specialized enzymes. Even during …
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SIPs with Standards
… SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible to … This episode, Rex Malmstrom (JGI), and Roli Wilhelm (Purdue University), share a few different ways they're working to … more reusable, and more insightful, for the future of studying microbial communities.   …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements … single cell genomics by collecting nearly 500 single cells from a single low diversity hot spring sediment sample. … into this unique environment, researchers from the University of Calgary and the U.S. Department of Energy …
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Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola
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Styling for Safety: PPE, It’s the JGI Way
… and illnesses. These injuries and illnesses may result from contact with chemical, biological, physical, … Over the last few months, we found an increasing number of colleagues missing elements of the required PPE in the lab. To address this issue, we … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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RETRACTED ARTICLE: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi
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Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation
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Benjamin Cole
… has been on understanding how microbes can colonize plant roots, focusing on genetic components required for effective … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic … List of pubs available on NCBI … Implementation of the Index of Cell Identity as an R package …
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Green Algae Reveal One mRNA Encodes Many Proteins
… a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous … the article. The research team included scientists at the University of California (UC), Berkeley, UCLA, UC Davis, … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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