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Whole genome assembly from 454 sequencing output via modified DNA graph concept
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iPHoP: A Matchmaker for Phages and their Hosts
… kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what … of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program …
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JGI Workshop at SIMB NP Meeting
… due to, for example, tight regulation of biosynthetic gene clusters (BGCs) in native hosts, the complexity of cloning … expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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Jeremy Schmutz
… al.  2024.The complex polyploid genome architecture of sugarcane. Nature 628, 804–810. Sreedasyam, A., Plott, C., MdS … Bennetzen, JL & Schmutz, J et al. 2012. Reference genome sequence of the model plant Setaria. Nature Biotechnology … Nature 2010;463:763-8. Schmutz, J et al. 2010. Genome sequence of the palaeopolyploid soybean. Nature 4637278: …
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JGI@25: Solving the Mystery of the Missing Oil
To find an explanation, his team tracked the thousands of bacterial and archaeal species using a DNA-based array …
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Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample
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Targeted Switchgrass BAC Library Screening and Sequence Analysis Identifies Predicted Biomass and Stress Response-Related Genes
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The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome
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Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01
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Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii
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Draft genome sequences of Bradyrhizobium shewense sp. nov. ERR11T and Bradyrhizobium yuanmingense CCBAU 10071T
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