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Plotting a Model for Virus-Host Warfare Deep Below Ground
The battle waged below the Earth’s surface is reconstructed by combining a study of microbial communities (metagenomics) … at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria … resist foreign genetic elements by incorporating short sequences from infecting viruses and phages. In these …
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JGIota: Looking Back at Methane-Making Microbes
… and wool. Hear more from JGI collaborators Sinead Leahy (New Zealand Agricultural Greenhouse Gas Research Centre) and …
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Gotta Catch 'Em Gall
Berkeley and the Joint BioEnergy Institute) are looking for new ways to engineer plants. So they’ve looked into wasps …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… . “After discussing the project with him, I was inspired by his enthusiasm and drive to give his students this … experience. My current career path was heavily influenced by my own high school biology teacher, who helped connect me … “When I originally envisioned the project of the class, I knew that I wanted them to write a final paper that  could be …
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Annual Genomics of Energy & Environment Meeting
DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – that the JGI offers through …
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Rex Malmstrom
… bacterial cells and amplifying their genetic material, thus bypassing the need to culture these microbes in the lab. … molecular protocols.  Finally, his team utilizes new technologies, e.g. acoustic liquid transfer and …
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Uri Neri
… messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our code would …
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FICUS Overview
… synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is … of results. … All proposals undergo technical review by JGI staff as well as staff at the other participating … review, proposals are evaluated and placed in rank order by the reviewers. The ranked proposal list, along with a …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… plant fibers. But are they both actually doing the job? By analyzing the enzymes present in the complex organic … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from their soil samples. This …
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JGI-UC Merced Interns Share Their 2021 Experiences
… in their academic career enjoyed the chance to develop new skills needed for their PhD research. And for the first … Line Between Plasmids and Phages … Polymorphisms Created by Transposable Elements … Evolution of the Mitochondria …
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Supercharging SIP in the Fungal Hyphosphere
The process involves “labeling” a given substance by applying a stable isotope to it. The isotopes are … study more samples and provides better resolution by splitting the DNA into more density fractions. It also … or hyphae. This region is called the hyphosphere. By studying its microbial communities, scientists can better …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… group at Oak Ridge National Laboratory, he has started a new position as the Senior Manager, Machine Learning at … relevant are service and respect, and I live these values by being able to pass along my knowledge to them as best as … living that dream from way long ago.”                     Byline: Graham Rutherford                         …
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