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Fourteen genome sequences from bacterial, environmental isolates from the Cotton Glacier stream, Antarctica
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Architecture, catalysis and regulation of methylthio-alkane reductase for bacterial sulfur acquisition from volatile organic compounds
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Seven genome sequences of bacterial environmental isolates from the western coast of the Greenland Ice Sheet
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics studies. The … that species specific sets of single cells harbored mobile genetic elements that were missed within paired metagenome … more moderate ecosystems. A few years ago, a candidate bacterial lineage was identified from microbial and …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who participated in internships at the DOE Joint Genome Institute this summer … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying them to environmental … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to … understanding which microbes are present in a sample, to generate data about which organisms are active, and which … These analyses provide granular insight into microbial functions, traits and competition, illuminating the inner …
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A sorghum genome-wide association study (GWAS) identifies a WRKY transcription factor as a candidate gene underlying sugarcane aphid (Melanaphis sacchari) resistance
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Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics … B.S in Biomedical Engineering, Johns Hopkins University; Ph.D. in Bioengineering, … T, et al. MAGI: A Method for Metabolite Annotation and Gene Integration. ACS Chem Biol. 2019;14: 704–714. 6. …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have … grasses using Panicum hallii (Hall’s panicgrass), by generating two complete genomes from varieties that diverged … research programs for developing methods for converting plant biomass into sustainable fuels for cars and jets. By …
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