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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… resonance energy transfer (BRET)-based biosensors. In general, CSL biosensors produce large signal changes, but … an insertion site for the E. coli cyclic di-GMP binding protein, Ec YcgR, within the Nano-lantern scaffold. They then … as candidate biosensors. These 92 homologues were synthesized as codon optimized sequences and cloned into the …
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Graduate Students Get Thesis Research Opportunity at the JGI
… between the two institutions to help train the next generation workforce.  Since its inception in 2014, more … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Accelerating Metagenomics Discoveries with Deep Learning
… rather than single cells or isolated strains, is easy to generate, but difficult to assemble and interpret. The … (JGI), presented on generating vector representations of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Cone Snail  Californiconus californicus (and cone snails in general) outside of mostly anecdotal information,” Ul-Hasan … and mentorship that followed. I especially want to emphasize the inclusive, collaborative working environment I have … between the two institutions to help train the next generation workforce. Co-advised by JGI Microbial Program …
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Statement on the Use of Genomics Data
… JGI has sustained its commitment to uploading sequence data generated on behalf of its user community to NCBI as well as … to the scientific community as soon as possible after data generation while retaining the ability of the principal … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Finding the Fermenters
… at the University of California, Davis and UC Santa Barbara generated a list of prokaryotes with fermentative metabolism … IMG data portals to get information about the genomes and genes of the organisms on the list. They also searched IMG/M for all protein-coding genes belonging to each genome. The final …
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Better Crops With a Pointillist Approach to Plant Genomics
… using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and …
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Cracking the Secrets of the Diatom’s Shell
… beautiful properties of their silica shells. But what genes are responsible for such mesmerizing exteriors? …
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Exploring the Diversity of the American Prairie’s Switchgrass
… traits — height, biomass, hardiness to cold, etc. — to its genes. The undertaking took shovels, trucks — and more than …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across …
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DOE JGI Interns Share Their Summer Experiences
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… projects were also intensively discussed. The Berkeley Synchrotron Infrared Structural Biology (BSISB) Program for the … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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