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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 1
… Gary Trubl, a virologist at Lawrence Livermore National Laboratory, wants to … how viruses impact the release of greenhouse gases from Arctic permafrost. But to see what they’re doing, he …
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Filling in the Plant Tree of Life
… What if we understood plants and how they adapt to their ever-changing environments … and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. One project …
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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal … our understanding of fungal diversity by sequencing genomes from across the fungal Tree of Life, but they also highlight … that at each of eight genes, having a single version from S. cerevisiae was sufficient to promote growth at high …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and … data sets of RNA sequences (metatranscriptomes) generated from diverse environmental samples around the world, … unlikely to contain the RdRP sequence. The work resulted from a three-way collaboration that began in 2019, recalled …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … years. The DOE brought together the people and resources from these three national labs to form the DOE Joint Genome …
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Alabama A&M Interns Access An Abundance of Knowledge
… In 2024, the DOE Joint Genome Institute and Alabama A&M University piloted an internship program to … Alabama A&M University this fall for my master’s in plant soil science and my career focus is plant breeding. Ti’Yanna …
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JGIota: Looking Back at Sequencing for Soybeans
… The soybean is a crop that could boost biofuels and fertilize fields. So in … threatens this important crop. Hear more about that work from researchers Gary Stacey (University of Missouri), Peter …
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Creating an Energy Market for Miscanthus
… What grass is a prized ornamental and a bioenergy plant? Meet Miscanthus , … Miscanthus will need some upgrades. In this episode, hear from scientists working on understanding Miscanthus biology …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings together established and emerging scientists from academia, industry, and government organizations for …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, …
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Ancient Algae Reveal Secrets of Plant Evolution
… Research uncovers the genetic foundations that helped plants … enhanced our understanding of how early plants transitioned from water to land. Key gene groups involved in stress … to thrive outside aquatic environments. The Impact A deeper understanding of how plants adapted to terrestrial …
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