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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… analysis of the AT enzyme family, the JGI provided DNA synthesis capabilities to enable functional testing of these enzymes. Yasuo Yoshikuni, head of the JGI’s DNA Synthesis Science program, underscored the value of … found that these enzymes have evolved distinctly from both core and specialized enzymes. Even during …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… of microbial assemblies, revealing the roles of microbial communities in carbon cycling, in interactions with plants, …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On March 17, 2020, a shelter-in-place …
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Fishing for Novel Cellulose Degraders
When they tested the screen method on a microbial community from geothermal hot springs, they uncovered a novel … cellulases from their captured genomes, the team then used DNA synthesis and cloning, followed by protein in vitro … activity assay. The work was  reported in  The ISME Journal . While the screen caught several microbes from known …
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Permanent Draft Genome Sequence of Desulfurococcus amylolyticus Strain Z-533T, a Peptide and Starch Degrader Isolated from Thermal Springs in the Kamchatka Peninsula and Kunashir Island, Russia
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High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India
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High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China
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Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park
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Biochemical characterization of Fsa16295Glu from “Fervidibacter sacchari,” the first hyperthermophilic GH50 with β-1,3-endoglucanase activity and founding member of the subfamily GH50_3
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Refining the Process of Identifying Algae Biotechnology Candidates
… toward developing a clean energy economy is developing alternative sustainable fuel sources. Developing candidate … sequence and then analyze the genomes and multi-omics datasets for algae that can be used for large-scale … for controlling the lipid content of biofuels sourced from algae. The collaborative approach highlights how the …
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Tracking the Origins of Methane-Producing Microbes
… user facility, report the discovery of a novel archaeum from a hot spring that has the genetic machinery to perform … small pools of cells that were then sequenced separately. From these samples, 111 metagenome-assembled genomes (MAGs) … Cells team member Frederik Schulz to screen the microbial communities collected. The team noticed some of the genomes …
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Introducing New Members of the JGI User Executive Committee
… is also interested in reaching and engaging with new international collaborators and other scientific organizations. Fungal biologist Stajich from UC Riverside sees the JGI’s open application process … to be an advocate helping both the scientific and education communities access and build on the JGI’s resources. The UEC …
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